Graham,
Thanks for posting this. It's extremely valuable, coming as it does from someone with a long and wide experience of other rigs before turning to junk rig. Me, I can hardly remember how to sail a bermudan rig now, having done so very infrequently in the last 30 years.
I do remember this, though: when hard pressed and sailing downwind, it's either impossible, or it will do damage, to hoist or reef a bermudan or gaff mainsail. It's always possible to hoist a junk sail, though it will take a lot of effort and a powerful winch to do so. The first few reefs will drop easily enough with the sail full of wind. The next few will eventually shake themselves down into place if there is a sea running, and the boat is rolling. I will agree, though, that the last stages of lowering the sail can be difficult, if it is plastered hard against the lifts and/or the mast. I have a yard downhaul rigged in the PJR fashion, but have not found it particularly effective, and have now rigged it directly to the yard halyard block, through a block at the mid point of the boom, to the deck and aft. I haven't tried this yet, but do feel that it will help under some circumstances.
I have always been against using a many-part halyard, with no winch, because of the friction that it adds in, both hoisting and lowering. The few huge raceboats as I've been able to see at close quarters seem to use only a 2:1 halyard with a large winch, large blocks and large line to hoist their very heavy mainsails, and I think this is the most efficient way - except for having the end of the halyard aloft. For that reason alone, I stick with a 3:1 halyard on a big sail. I did use a 2:1 halyard on my small mizzen wingsail, though, and didn't get into any trouble. Sometimes I fantasise about getting some of the modern cylindrical roller bearing blocks (emphatically not ball bearing blocks, which have a short life) as made by Lewmar, Harken and others, but when I see the prices, I keep my credit card firmly under control.
I, too, think that a deeply reefed junk sail, so long as the yard can be kept near vertical, is an efficient rig to windward. This is one of the things that makes me a "fan" :-) of the fanned sail, the fact that the deeper you reef, the better it gets. As soon as the yard has to be lowered to a shallower angle, the junk sail becomes less good - which is one of the factors that puts me off the Van Loan and split-junk rigs. Even these, though, will compare well in heavy weather with a rolling headsail that is almost rolled away, and is in a terrible shape. And I do find that when I'm in company with bermudan boats, and there's some wind about, I'm the one that's sailing to windward, when the bermudan boats find it to be all too much like hard work and turn the engine key.
I agree with all you say in your paragraph on the subject of "all rigs are compromises", except for the increased potential for chafe. We don't chafe our sails against shrouds and spreaders, we don't need baggywrinkle, and I've never found chafe against the lifts to be a major problem. We do have our own chafe problems, admittedly, particularly in the area where the battens contact the mast, and where the sailcloth gets trapped between the battens and the mast when reefed.
I have fixed things on both the sail and the battens in mid ocean. Sometimes it's not been easy - but compared with fixing a roller headsail, or a jammed in-mast furler, well, at least it's been possible. More important to me is the fact that I can fix the rig in any remote anchorage, using tools and materials that I can carry aboard.