Andrew wrote: It is very encouraging, especially if I can use the original mast position. At the moment is has a sort of rubber boot to seal it to the deck.
Being able to place a junk rig at the position of the original mast would be an unusual situation, but theoretically possible as a special case. With your rig (which seems to have a large main and relatively very small fore triangle) - and the SJR (which has extreme high balance) I think it might be possible. I was guessing the proportions of the rig so you would need to get measurements and draw up the rig as it was originally designed, before coming to any firm conclusions. It is also a good idea of yours to sail the boat for a season because this way you can confirm if the designer had things right in the first place, before just following the designed centre of area of the sail plan. (That remark of Graham C suggests perhaps the centre of area may be a little too far aft, weather helm etc, but you would be well-informed if you were to sail a season with the original rig, and determine that for yourself).
Arne followed a different procedure and found the Centre of Area of the underwater hull (called CLR, see below) and then used his experience with junk rigs over many years to estimate where the sail should be placed relative to the CLR. Arne reached a different tentative conclusion from my tentative conclusion, placing the centre of area of the sail somewhat further forward (which, also, is consistent with the remark of Graham C). It will be interesting to see how it works out. The mast position chosen by Arne will not suit the Amiina rig but he feels it will suit one of his Johanna rigs - and also the Johanna rigs give a bit more flexibility in this respect than the Amiina rig. If you want the mast to go through the hatch (which would not be my choice, but that doesn't matter) then fairly certainly that will be too far forward for an extreme high balance rig such as the Amiina, and you will be looking at one of the beautiful high-peaked Johanna rigs, I would expect.
Finally, I should say that Arne has designed many successful rigs over many years, being one of the pioneers of the modern cambered junk rig, whereas I have only theoretical knowledge when it comes to junk rig, plus the one rig I have built and tested for myself, so I do not belong in the category of "expert". However, I still recommend that you make an accurate drawing first, of the original rig as designed, and if you have a season of sailing with the original rig as well, you will then be in an excellent position to discuss things with Arne and make the right choice.
The centre of gravity, by the way, does not really have much to do with mast placement. From that point of view it is good to have the mast a little bit aft rather than too far forward as it will have some effect on the pitching motion of the boat in a seaway, but in practice that does not seem to be much of an issue for most people. The more important issue is to get the sail itself in the right position so that you have good helm balance in as wide a range of conditions as possible.
(CLR means "Centre of Lateral Resistance" which is a little bit of a misnomer, because it is calculated as the geometric centre of the profile outline of the under water part of the hull. Nothing really to do with the centre of gravity of the boat itself, but if you were to make a cardboard cutout of the underwater profile and balance it on a knife-edge, it is then possible to estimate where that geometric centre (the CLR) is located. There is some discussion as to whether the rudder should or should not be included in that profile of the under-water part of the hull.)
("Balance" in this discussion means the percentage of sail area which is forward of the mast centre line. The Amiina rig has 33% - 35% of the sail area ahead of the mast, which is about as much as you can get on a lug sail. More than that causes problems. It is the split in the sail which allows this extra large balance. Ordinary unsplit rigs vary in balance from about 10% to 20% or even 25% - recently the balance has been pushed higher and it seems OK. So, getting the mast in the right place means getting the sail, mast and balance, all three, in harmony.
This balance is not to be confused with "helm balance" which is just a description of how the boat sails, with weather helm (a little bit is good) or neutral helm - or lee helm which is not so good. If the sail is in the wrong place, the helm balance might be all wrong. Helm balance is not entirely a fixed property - many boats develop weather helm as the wind gets stronger and the boat starts to heel. And junk rig sloops are a bit inclined to develop weather helm when reaching and running, though your long keel, cut-away forefoot and good large rudder are all positives here.
"Publications to help learn the basics": my suggestion would be Arne's files which can be found on this website, go to Members' Area/Documents/Technical Articles/Arnes Files and read chapters 1 - 4 an excellent introduction.